Software

PGS.TRI

An R package for estimating risk parameters under polygenic models from case-parent trios using a likelihood-based method. [Preprint]

RetroGE

An R package for efficient modeling of gene-environment interactions and correlations using polygenic risk score (PRS) in case-control studies [Paper]

IMIX

An R package for integrative genomics using a multivariate mixture model framework. [Paper]

Spatial IMIX

An R package for a mixture model approach to spatially correlated multi-omics data integration. [Preprint]

MvTrend

An R package for trend testing in benefit-risk analysis with prioritized multiple outcomes. [Paper]